Cynthia SC (10-30-2025)

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My Bioinformatics Notebooks

A growing collection with bi-weekly updates, containing links to papers, workflows, conceptual maps, and insights for scRNA-seq, scATAC-seq, multiome, and Visium spatial transcriptomics.

Go –> Bioinformatic_Notebook


Walkthroughs in multiomics | YouTube

Title: LIEBER - Behind the Scenes of Spatial an Multiomic Data Analysis in Neuroscience 🧠🧬
Playlist featuring walkthroughs of my work with a focus on the human brain. Multiome pipelines like CellRanger ARC and Data-driven discussions. Thanks to PhD Collado who compiled, edited and allocated all these recordings. Youtube


Multiomics Slides | SpeakerDeck

Title: LIEBER - Slides for talks
Spatial transcriptomics and multiomics. Material used for internal talks, the R-StatClub and conferences. SpeakerDeck

View my presentations on SpeakerDeck

Transcriptomics in Arabidopsis | Youtube playlist

Title: CICY – Arabidopsis Pathogenesis
Compiles a set of talks and presentations in which I discussed topics in molecular biology, plant genetics, and transcriptomic analysis in Arabidopsis thaliana. YouTube Playlist