📓 Single Cell ATAC-seq Analysis

Welcome!

Notebook: 08-01-2025

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A quick reminder. In the following sections, for consistency, my notes will generally follow this layout:

  1. Background – a quick overview of the topic (conceptual maps, videos, etc)

  2. Technical Support Notes – organized into five areas (papers, vignettes, tutorials, etc), as described below:

    1. Key Literature – Papers, papers, and more papers
    2. Vignettes & Tutorials – Broad, but still helpful
    3. Core Functions & References – What’s most relevant now
    4. Custom Repo Practices – Tips from my own workflows
    5. Behind-the-Scenes Tools & File Formats – The underrated but essential stuff

Table of contents